Databases/servers with topological information about proteins
KnotProt
A database of proteins with knots and slipknots
LassoProt
A server and database of proteins with lassos
LinkProt
A database of proteins with topological links
Plugins/programs for proteins topology identification
PyLasso
A plugin to detect lassos and to analyze their geometric structure
PyLink
A plugin to identify links
Knot_pull
Python package for biopolymer smoothing and knot detection
Server with information about mechanical properties of proteins
Bio-molecule stretching database
A database that contains information related to mechanical stretching of biomolecules
Prediction of proteins structures based on co-evolution methods
DCA-mol
A plugin to analyze direct evolutionary couplings
PconsFam
A database of PFAM families modelled using the PconsFold2 pipeline
Server for protein backbone reconstruction
GapRepairer
Server for automatic reconstruction of missing parts of protein models
Database and servers for chromatin analysis (knots and links)
KnotGenome
A server to detect entanglement in and between chromosomes
